STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000005167Pseudouridine synthase 7. (584 aa)    
Predicted Functional Partners:
ENSGMOP00000007983
NOC3-like DNA replication regulator.
   
   0.955
ENSGMOP00000006253
Mitochondrial ribosomal protein L15.
  
   0.879
ENSGMOP00000005110
Mitochondrial ribosomal protein L13.
   
   0.871
mtg1
Mitochondrial ribosome associated GTPase 1.
   
   0.870
ENSGMOP00000014545
Mitochondrial ribosomal protein L17.
  
   0.870
ENSGMOP00000011725
annotation not available
  
   0.869
ENSGMOP00000004893
Si:dkey-85a20.4.
   
   0.862
ENSGMOP00000011800
RNA pseudouridine synthase domain containing 2.
   
 
 0.860
ENSGMOP00000011289
annotation not available
   
   0.859
ENSGMOP00000019058
RNA pseudouridine synthase D4.
   
 
 0.859
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.