STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000005645Lysine (K)-specific demethylase 4C. (1009 aa)    
Predicted Functional Partners:
ENSGMOP00000020240
Lysine (K)-specific demethylase 1a.
   
 0.744
ENSGMOP00000004156
Zinc finger protein 217.
    
  0.677
ENSGMOP00000000469
annotation not available
    
 0.665
ENSGMOP00000014914
Ring finger protein 8, E3 ubiquitin protein ligase.
    
 0.658
ENSGMOP00000009514
Protein inhibitor of activated STAT, 4a.
   
 0.657
ENSGMOP00000004009
annotation not available
     
 0.637
ENSGMOP00000009537
ATM serine/threonine kinase.
     
 0.633
LOC115546069
Histone H2A.V.
    
 0.627
H2AZ1
H2A.Z variant histone 1.
    
 0.627
ENSGMOP00000004113
Nuclear receptor binding SET domain protein 2.
     
 0.615
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.