STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115546069Histone H2A.V. (128 aa)    
Predicted Functional Partners:
ruvbl1
RuvB like AAA ATPase 1.
   
 0.952
ENSGMOP00000002782
Vacuolar protein sorting 72 homolog a.
    
 
 0.946
ENSGMOP00000018683
annotation not available
   
 0.926
ENSGMOP00000020159
Translocase of outer mitochondrial membrane 20.
   
 0.926
ENSGMOP00000013497
Transmembrane protein 177.
    
 
 0.923
ENSGMOP00000001496
Histone deacetylase 3.
   
 0.917
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.913
ENSGMOP00000003922
Actin related protein 6.
   
 
 0.909
ENSGMOP00000008139
DNA methyltransferase 1 associated protein 1.
    
 
 0.908
yeats4
YEATS domain containing 4.
   
 
 0.905
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.