STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMJD8Jumonji domain containing 8. (236 aa)    
Predicted Functional Partners:
snf8
SNF8 subunit of ESCRT-II.
 
      0.673
ENSGMOP00000018095
WD repeat domain 24.
 
 
    0.673
etf1
Eukaryotic translation termination factor 1.
    
 
 0.630
ENSGMOP00000017195
Ribosomal oxygenase 2.
      
 0.514
ENSGMOP00000006085
CDK2 associated cullin domain 1.
      
 0.426
ENSGMOP00000020057
Coiled-coil domain containing 6a.
      
 0.426
ENSGMOP00000019963
NIMA-related kinase 7.
      
 0.418
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.