STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000005903Retinol binding protein 3. (629 aa)    
Predicted Functional Partners:
ENSGMOP00000007599
Clusterin-like 1 (retinal).
   
  
 0.876
ENSGMOP00000001117
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.816
ENSGMOP00000020332
Clusterin.
   
  
 0.467
RHO
Rhodopsin.
   
  
 0.461
ENSGMOP00000018594
annotation not available
   
  
 0.461
ENSGMOP00000018611
annotation not available
   
  
 0.461
ENSGMOP00000018628
annotation not available
   
  
 0.461
LOC115549022
Rhodopsin.
   
  
 0.461
gnat1
G protein subunit alpha transducin 1.
   
  
 0.426
ENSGMOP00000013430
Retinal G protein coupled receptor a.
   
  
 0.413
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.