STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000006087annotation not available (550 aa)    
Predicted Functional Partners:
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
   
 0.989
ENSGMOP00000013381
SMU1 DNA replication regulator and spliceosomal factor b.
   
 0.980
ENSGMOP00000016770
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.973
ENSGMOP00000003709
Microfibril associated protein 1.
   
  0.967
ENSGMOP00000012171
pre-mRNA processing factor 38A.
   
 0.946
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.908
ENSGMOP00000003939
WD repeat domain 55.
 
      0.899
ENSGMOP00000009200
annotation not available
   
  0.889
ENSGMOP00000003179
Zinc finger, matrin-type 2.
    
  0.886
txnl4a
Thioredoxin like 4A.
    
  0.886
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.