STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000006143Protein geranylgeranyltransferase type I, beta subunit. (355 aa)    
Predicted Functional Partners:
ENSGMOP00000006015
Farnesyltransferase, CAAX box, alpha.
    
 0.998
ENSGMOP00000010326
Phosphoribosylglycinamide formyltransferase.
      
 0.579
LOC115557768
Ras-related protein Rap-1A-like.
    
 
 0.530
LOC115550068
Ras-related protein Rap-1b.
    
 
 0.530
ENSGMOP00000006156
annotation not available
 
  
 
 0.522
ENSGMOP00000005706
3-hydroxyacyl-CoA dehydratase 1.
     
 0.514
ENSGMOP00000013927
3-hydroxyacyl-CoA dehydratase 2.
     
 0.514
icmt
Isoprenylcysteine carboxyl methyltransferase.
      
 0.491
ENSGMOP00000005504
Ras converting CAAX endopeptidase 1a.
      
 0.491
ENSGMOP00000011669
AMMECR nuclear protein 1.
    
   0.467
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.