STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000006148Protocadherin 17. (1092 aa)    
Predicted Functional Partners:
ENSGMOP00000005425
Four-jointed box kinase 1.
   
  0.588
ENSGMOP00000000860
FAT atypical cadherin 1a.
   
 
0.548
ENSGMOP00000018644
FAT atypical cadherin 2.
   
 
0.548
ENSGMOP00000008134
Uridine-cytidine kinase 2a.
    
  0.466
CTNNB1
Catenin beta 1.
    
  0.466
ENSGMOP00000012705
Uridine-cytidine kinase 2b.
    
  0.466
ENSGMOP00000014969
annotation not available
    
  0.466
ENSGMOP00000017087
annotation not available
    
  0.466
uck1
Uridine-cytidine kinase 1.
    
  0.466
ENSGMOP00000018213
annotation not available
    
  0.466
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.