STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000007487Ring finger protein 44. (434 aa)    
Predicted Functional Partners:
ENSGMOP00000012733
Ribosomal protein S27a.
    
 0.920
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.914
ENSGMOP00000001081
Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast).
   
 0.713
LOC115552586
Ubiquitin-conjugating enzyme E2 K.
   
 0.713
ube2v2
Ubiquitin conjugating enzyme E2 V2.
   
 0.699
ENSGMOP00000001357
SMAD family member 6a.
   
 0.697
smad7
SMAD family member 7.
   
 0.697
ENSGMOP00000008948
SMAD family member 6b.
   
 0.697
ENSGMOP00000007083
Zinc finger, AN1-type domain 4.
   
 0.678
ube2n
Ubiquitin conjugating enzyme E2 N.
   
 0.673
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.