STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000007588SPT6 homolog, histone chaperone and transcription elongation factor. (1712 aa)    
Predicted Functional Partners:
ENSGMOP00000009303
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.997
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.983
ENSGMOP00000018999
Structure specific recognition protein 1a.
   
 0.980
ENSGMOP00000005010
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.976
ENSGMOP00000003655
SPT5 homolog, DSIF elongation factor subunit.
   
 0.971
ENSGMOP00000002199
CTR9 homolog, Paf1/RNA polymerase II complex component.
  
 0.958
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.957
polr2c
RNA polymerase II subunit C.
    
 0.955
ENSGMOP00000000519
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.953
ENSGMOP00000017428
Polymerase (RNA) II (DNA directed) polypeptide B.
   
 0.951
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.