STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000008920Leucine-rich pentatricopeptide repeat containing. (1350 aa)    
Predicted Functional Partners:
ENSGMOP00000018196
SRA stem-loop interacting RNA binding protein.
   
 
 0.930
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
   
 
 0.727
ENSGMOP00000020984
annotation not available
   
 
 0.727
ENSGMOP00000010883
G elongation factor, mitochondrial 1.
   
  
 0.710
ENSGMOP00000002495
Pentatricopeptide repeat domain 3.
   
  
 0.661
LOC115560196
Cytochrome c.
   
 
 0.624
LOC115533447
Cytochrome c-like.
   
 
 0.624
ENSGMOP00000014929
Mitochondrial ribosomal protein S22.
   
  
 0.554
ENSGMOP00000015149
Heat shock protein 9.
   
 
 0.543
mrpl58
Mitochondrial ribosomal protein L58.
    
 
 0.539
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.