STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000009611Vacuolar protein sorting 13 homolog D. (4386 aa)    
Predicted Functional Partners:
ENSGMOP00000013200
Zinc finger, ZZ-type with EF hand domain 1.
   
    0.533
ENSGMOP00000003455
Si:dkeyp-104h9.5.
      
 0.527
ENSGMOP00000000936
Proline rich 16.
      
 0.506
ENSGMOP00000012588
Lysine (K)-specific methyltransferase 2A.
  
  
 0.472
ENSGMOP00000009431
Autophagy related 2A.
   
  
 0.451
ENSGMOP00000012438
annotation not available
    
 
 0.451
ATG2B
Autophagy related 2B.
   
  
 0.451
ENSGMOP00000017293
Mitoguardin 2.
      
 0.437
ENSGMOP00000013905
Jumonji domain containing 1Cb.
  
    0.433
park7
Parkinsonism associated deglycase.
      
 0.431
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.