STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000009803Sorting nexin 1a. (509 aa)    
Predicted Functional Partners:
ENSGMOP00000017805
Cyclin G associated kinase.
   
 0.982
ENSGMOP00000015534
Sorting nexin 6.
   
0.938
ENSGMOP00000019695
Sorting nexin 5.
   
0.938
ENSGMOP00000009187
VPS35 retromer complex component.
   
 
 0.916
ENSGMOP00000010722
VPS29 retromer complex component.
   
 
 0.910
ENSGMOP00000018900
annotation not available
  
  
0.866
ENSGMOP00000013255
VPS26, retromer complex component A.
   
 
 0.795
ENSGMOP00000011162
VPS26, retromer complex component B.
   
 
 0.749
ENSGMOP00000012097
annotation not available
   
 
 0.749
ENSGMOP00000001057
Insulin-like growth factor 2 receptor.
    
 0.743
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.