STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000009899Snurportin 1. (349 aa)    
Predicted Functional Partners:
ENSGMOP00000012414
Karyopherin (importin) beta 1.
    
 0.988
ENSGMOP00000004340
annotation not available
    
 0.963
LOC115540663
Exportin-1-like.
    
 
 0.945
ENSGMOP00000020516
Exportin 1 (CRM1 homolog, yeast) b.
    
 
 0.945
ENSGMOP00000019602
Ubiquitin-conjugating enzyme E2C.
     
 0.910
ENSGMOP00000017496
Small nuclear ribonucleoprotein polypeptide E.
    
 0.889
ENSGMOP00000007249
Adhesion G protein-coupled receptor D1.
    
 
 0.837
ENSGMOP00000015288
RAN, member RAS oncogene family.
    
 
 0.837
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.815
ENSGMOP00000014502
N(alpha)-acetyltransferase 38, NatC auxiliary subunit.
    
 0.811
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.