LAMA2 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LAMA2

Laminin subunit alpha 2. (3019 aa)

Predicted Functional Partners:

ENSGMOP00000016347

0.960

ENSGMOP00000000485

0.939

ENSGMOP00000005320

0.939

ENSGMOP00000007049

0.939

ENSGMOP00000003512

0.931

ENSGMOP00000019125

0.931

ENSGMOP00000000802

0.918

ENSGMOP00000019533

0.918

ENSGMOP00000001731

0.910

ENSGMOP00000014489

0.907

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGMOP00000000485	ENSGMOP00000000802	ENSGMOP00000000485	ENSGMOP00000000802	Laminin, gamma 3.	Laminin, beta 1a.	0.948
ENSGMOP00000000485	ENSGMOP00000001731	ENSGMOP00000000485	ENSGMOP00000001731	Laminin, gamma 3.	annotation not available	0.902
ENSGMOP00000000485	ENSGMOP00000003512	ENSGMOP00000000485	ENSGMOP00000003512	Laminin, gamma 3.	Dystroglycan 1.	0.882
ENSGMOP00000000485	ENSGMOP00000014489	ENSGMOP00000000485	ENSGMOP00000014489	Laminin, gamma 3.	Integrin, alpha 8.	0.887
ENSGMOP00000000485	ENSGMOP00000016347	ENSGMOP00000000485	ENSGMOP00000016347	Laminin, gamma 3.	annotation not available	0.954
ENSGMOP00000000485	ENSGMOP00000019125	ENSGMOP00000000485	ENSGMOP00000019125	Laminin, gamma 3.	annotation not available	0.882
ENSGMOP00000000485	ENSGMOP00000019533	ENSGMOP00000000485	ENSGMOP00000019533	Laminin, gamma 3.	Laminin, beta 2 (laminin S).	0.946
ENSGMOP00000000485	LAMA2	ENSGMOP00000000485	ENSGMOP00000010177	Laminin, gamma 3.	Laminin subunit alpha 2.	0.939
ENSGMOP00000000802	ENSGMOP00000000485	ENSGMOP00000000802	ENSGMOP00000000485	Laminin, beta 1a.	Laminin, gamma 3.	0.948
ENSGMOP00000000802	ENSGMOP00000001731	ENSGMOP00000000802	ENSGMOP00000001731	Laminin, beta 1a.	annotation not available	0.938
ENSGMOP00000000802	ENSGMOP00000003512	ENSGMOP00000000802	ENSGMOP00000003512	Laminin, beta 1a.	Dystroglycan 1.	0.875
ENSGMOP00000000802	ENSGMOP00000005320	ENSGMOP00000000802	ENSGMOP00000005320	Laminin, beta 1a.	annotation not available	0.946
ENSGMOP00000000802	ENSGMOP00000007049	ENSGMOP00000000802	ENSGMOP00000007049	Laminin, beta 1a.	annotation not available	0.948
ENSGMOP00000000802	ENSGMOP00000014489	ENSGMOP00000000802	ENSGMOP00000014489	Laminin, beta 1a.	Integrin, alpha 8.	0.893
ENSGMOP00000000802	ENSGMOP00000016347	ENSGMOP00000000802	ENSGMOP00000016347	Laminin, beta 1a.	annotation not available	0.826
ENSGMOP00000000802	ENSGMOP00000019125	ENSGMOP00000000802	ENSGMOP00000019125	Laminin, beta 1a.	annotation not available	0.875
ENSGMOP00000000802	LAMA2	ENSGMOP00000000802	ENSGMOP00000010177	Laminin, beta 1a.	Laminin subunit alpha 2.	0.918
ENSGMOP00000001731	ENSGMOP00000000485	ENSGMOP00000001731	ENSGMOP00000000485	annotation not available	Laminin, gamma 3.	0.902
ENSGMOP00000001731	ENSGMOP00000000802	ENSGMOP00000001731	ENSGMOP00000000802	annotation not available	Laminin, beta 1a.	0.938
ENSGMOP00000001731	ENSGMOP00000005320	ENSGMOP00000001731	ENSGMOP00000005320	annotation not available	annotation not available	0.911