STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000010255DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (788 aa)    
Predicted Functional Partners:
ENSGMOP00000002222
pre-mRNA processing factor 8.
   
 0.999
eftud2
Elongation factor Tu GTP binding domain containing 2.
  
 0.998
ENSGMOP00000016770
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.998
ENSGMOP00000011201
Small nuclear ribonucleoprotein 40 (U5).
    
 0.997
txnl4a
Thioredoxin like 4A.
    
 0.996
ENSGMOP00000005227
Small nuclear ribonucleoprotein 200 (U5).
  
 0.990
ENSGMOP00000017496
Small nuclear ribonucleoprotein polypeptide E.
   
 0.990
ENSGMOP00000014791
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.988
ENSGMOP00000006612
Small nuclear ribonucleoprotein polypeptide G.
   
 0.986
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.986
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.