STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000010822Carnitine palmitoyltransferase 1Ab (liver). (776 aa)    
Predicted Functional Partners:
ENSGMOP00000008111
Carnitine palmitoyltransferase 2.
  
 
0.878
ENSGMOP00000005990
acyl-CoA synthetase long chain family member 2.
   
 
 0.870
ENSGMOP00000013938
annotation not available
   
 
 0.869
acsl5
acyl-CoA synthetase long chain family member 5.
   
 
 0.869
ENSGMOP00000012886
acetyl-CoA carboxylase beta.
     
 0.867
ENSGMOP00000003305
acyl-CoA synthetase long chain family member 4a.
   
 
 0.858
ENSGMOP00000006553
acyl-CoA synthetase long chain family member 3b.
   
 
 0.858
ENSGMOP00000013094
Carnitine palmitoyltransferase 1B (muscle).
  
 
 
0.855
ENSGMOP00000016923
annotation not available
   
 
 0.851
ENSGMOP00000011776
acyl-CoA synthetase bubblegum family member 2.
     
 0.850
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.