ENSGMOP00000010913 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000010913

annotation not available (161 aa)

Predicted Functional Partners:

ENSGMOP00000014069

0.826

ENSGMOP00000003705

0.825

ENSGMOP00000012733

0.722

ENSGMOP00000008109

0.717

ENSGMOP00000007765

0.572

ENSGMOP00000010831

0.554

ENSGMOP00000010713

0.552

ENSGMOP00000016690

0.552

ENSGMOP00000014228

0.551

ENSGMOP00000001989

0.549

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSGMOP00000001989	ENSGMOP00000003705	annotation not available	annotation not available	0.669
ENSGMOP00000001989	ENSGMOP00000007765	annotation not available	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.866
ENSGMOP00000001989	ENSGMOP00000010831	annotation not available	RAB21, member RAS oncogene family.	0.444
ENSGMOP00000001989	ENSGMOP00000010913	annotation not available	annotation not available	0.549
ENSGMOP00000001989	ENSGMOP00000014069	annotation not available	Rabaptin, RAB GTPase binding effector protein 1.	0.880
ENSGMOP00000003705	ENSGMOP00000001989	annotation not available	annotation not available	0.669
ENSGMOP00000003705	ENSGMOP00000010913	annotation not available	annotation not available	0.825
ENSGMOP00000003705	ENSGMOP00000014228	annotation not available	RAB24, member RAS oncogene family.	0.669
ENSGMOP00000007765	ENSGMOP00000001989	Alsin Rho guanine nucleotide exchange factor ALS2 b.	annotation not available	0.866
ENSGMOP00000007765	ENSGMOP00000008109	Alsin Rho guanine nucleotide exchange factor ALS2 b.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.545
ENSGMOP00000007765	ENSGMOP00000010713	Alsin Rho guanine nucleotide exchange factor ALS2 b.	NME/NM23 family member 8.	0.712
ENSGMOP00000007765	ENSGMOP00000010913	Alsin Rho guanine nucleotide exchange factor ALS2 b.	annotation not available	0.572
ENSGMOP00000007765	ENSGMOP00000012733	Alsin Rho guanine nucleotide exchange factor ALS2 b.	Ribosomal protein S27a.	0.494
ENSGMOP00000007765	ENSGMOP00000014228	Alsin Rho guanine nucleotide exchange factor ALS2 b.	RAB24, member RAS oncogene family.	0.845
ENSGMOP00000008109	ENSGMOP00000007765	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.545
ENSGMOP00000008109	ENSGMOP00000010713	Ubiquitin A-52 residue ribosomal protein fusion product 1.	NME/NM23 family member 8.	0.617
ENSGMOP00000008109	ENSGMOP00000010913	Ubiquitin A-52 residue ribosomal protein fusion product 1.	annotation not available	0.717
ENSGMOP00000008109	ENSGMOP00000012733	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
ENSGMOP00000008109	ENSGMOP00000016690	Ubiquitin A-52 residue ribosomal protein fusion product 1.	annotation not available	0.403
ENSGMOP00000010713	ENSGMOP00000007765	NME/NM23 family member 8.	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.712