STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000011279MINDY lysine 48 deubiquitinase 1. (330 aa)    
Predicted Functional Partners:
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
   0.817
ENSGMOP00000012733
Ribosomal protein S27a.
    
   0.783
ENSGMOP00000009245
annotation not available
    
 0.738
ENSGMOP00000011240
Methylmalonyl CoA mutase.
    
 0.738
ENSGMOP00000017036
SET domain containing 3, actin histidine methyltransferase.
    
 0.738
ENSGMOP00000012684
annotation not available
    
  0.611
ENSGMOP00000013030
Ring finger protein 126.
    
  0.611
ENSGMOP00000006005
annotation not available
    
   0.606
ENSGMOP00000007083
Zinc finger, AN1-type domain 4.
    
   0.606
ENSGMOP00000009338
annotation not available
    
   0.606
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.