STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000011628Cingulin b. (1125 aa)    
Predicted Functional Partners:
ENSGMOP00000004797
Rho guanine nucleotide exchange factor (GEF) 1a.
     
 0.895
ENSGMOP00000001001
annotation not available
   
 
 0.894
ENSGMOP00000004985
Tight junction protein 1b.
   
 
 0.893
ENSGMOP00000014303
Rho/rac guanine nucleotide exchange factor (GEF) 18b.
     
 0.853
ENSGMOP00000013407
Rho/rac guanine nucleotide exchange factor (GEF) 18a.
     
 0.849
ENSGMOP00000008471
Cingulin a.
  
  
 
0.846
ENSGMOP00000008105
Tight junction protein 3.
   
 
 0.735
ENSGMOP00000010786
Tight junction protein 2a (zona occludens 2).
   
 
 0.693
ENSGMOP00000017750
annotation not available
   
 
 0.693
ENSGMOP00000000294
Rho guanine nucleotide exchange factor (GEF) 28a.
     
 0.577
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.