STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000011851Ubiquitin specific peptidase 40. (1087 aa)    
Predicted Functional Partners:
ENSGMOP00000008291
Tumor protein p53.
    
 0.977
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.961
ENSGMOP00000012733
Ribosomal protein S27a.
   
 0.941
ENSGMOP00000009647
Guanine monophosphate synthase.
   
 
 0.906
ENSGMOP00000000523
UV-stimulated scaffold protein A.
    
 0.887
ENSGMOP00000003747
DNA (cytosine-5-)-methyltransferase 1.
   
 
 0.880
ENSGMOP00000007861
Thyroid hormone receptor interactor 12.
   
 
 0.852
ENSGMOP00000001318
Transmembrane phosphatase with tensin homology.
   
 0.791
ENSGMOP00000012337
annotation not available
   
 0.791
ENSGMOP00000012590
Phosphatase and tensin homolog A.
   
 0.791
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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