STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000012017Endoplasmic reticulum to nucleus signaling 1. (931 aa)    
Predicted Functional Partners:
ENSGMOP00000002587
Heat shock protein 5.
   
 0.945
ENSGMOP00000004798
Si:ch211-1i11.3.
   
0.793
ENSGMOP00000019122
Mitogen-activated protein kinase kinase kinase 5.
   
0.793
ENSGMOP00000012153
Tnf receptor-associated factor 2b.
   
 0.792
ENSGMOP00000000529
X-box binding protein 1.
    
 0.791
ENSGMOP00000009024
annotation not available
   
 0.718
TRAF2
TNF receptor associated factor 2.
   
 0.718
ENSGMOP00000000142
Mitogen-activated protein kinase kinase kinase 15.
   
0.675
ENSGMOP00000014534
Intersectin 2b.
   
  0.658
ENSGMOP00000019906
Intersectin 2a.
   
  0.658
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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