STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000012068TBC1 domain family, member 16. (732 aa)    
Predicted Functional Partners:
ENSGMOP00000016447
Diacylglycerol kinase, epsilon.
      
 0.732
ENSGMOP00000001938
RAB4B, member RAS oncogene family.
    
 0.729
ENSGMOP00000013326
RAB4a, member RAS oncogene family.
    
 0.729
ENSGMOP00000020545
Caspase recruitment domain family, member 14.
      
 0.692
WDFY4
WDFY family member 4.
      
 0.590
ENSGMOP00000010500
Phospholipase A2, group VI (cytosolic, calcium-independent).
      
 0.522
ENSGMOP00000005272
TBC1 domain family, member 23.
      
 0.519
ENSGMOP00000017240
Polycomb group ring finger 1.
      
 0.507
ENSGMOP00000018917
Polycomb group ring finger 5a.
      
 0.500
ENSGMOP00000012915
RAB2A, member RAS oncogene family.
    
 0.496
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.