ENSGMOP00000012073 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000012073

RAB27B, member RAS oncogene family. (125 aa)

Predicted Functional Partners:

ENSGMOP00000020368

0.896

ENSGMOP00000006058

0.744

ENSGMOP00000005713

0.731

ENSGMOP00000007865

0.676

ENSGMOP00000008695

0.650

ENSGMOP00000001292

0.648

ENSGMOP00000007279

0.648

ENSGMOP00000011061

0.648

ENSGMOP00000007775

0.645

ENSGMOP00000002675

0.625

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSGMOP00000001292	ENSGMOP00000012073	annotation not available	RAB27B, member RAS oncogene family.	0.648
ENSGMOP00000002675	ENSGMOP00000005713	GDP dissociation inhibitor 2.	MAP-kinase activating death domain.	0.625
ENSGMOP00000002675	ENSGMOP00000006058	GDP dissociation inhibitor 2.	annotation not available	0.645
ENSGMOP00000002675	ENSGMOP00000008695	GDP dissociation inhibitor 2.	Rab geranylgeranyltransferase subunit alpha.	0.661
ENSGMOP00000002675	ENSGMOP00000012073	GDP dissociation inhibitor 2.	RAB27B, member RAS oncogene family.	0.625
ENSGMOP00000002675	ENSGMOP00000020368	GDP dissociation inhibitor 2.	RAB27B, member RAS oncogene family.	0.599
ENSGMOP00000005713	ENSGMOP00000002675	MAP-kinase activating death domain.	GDP dissociation inhibitor 2.	0.625
ENSGMOP00000005713	ENSGMOP00000006058	MAP-kinase activating death domain.	annotation not available	0.651
ENSGMOP00000005713	ENSGMOP00000012073	MAP-kinase activating death domain.	RAB27B, member RAS oncogene family.	0.731
ENSGMOP00000005713	ENSGMOP00000020368	MAP-kinase activating death domain.	RAB27B, member RAS oncogene family.	0.701
ENSGMOP00000006058	ENSGMOP00000002675	annotation not available	GDP dissociation inhibitor 2.	0.645
ENSGMOP00000006058	ENSGMOP00000005713	annotation not available	MAP-kinase activating death domain.	0.651
ENSGMOP00000006058	ENSGMOP00000008695	annotation not available	Rab geranylgeranyltransferase subunit alpha.	0.984
ENSGMOP00000006058	ENSGMOP00000012073	annotation not available	RAB27B, member RAS oncogene family.	0.744
ENSGMOP00000006058	ENSGMOP00000020368	annotation not available	RAB27B, member RAS oncogene family.	0.725
ENSGMOP00000007279	ENSGMOP00000012073	Synaptotagmin-like 1.	RAB27B, member RAS oncogene family.	0.648
ENSGMOP00000007775	ENSGMOP00000012073	CD63 molecule.	RAB27B, member RAS oncogene family.	0.645
ENSGMOP00000007865	ENSGMOP00000012073	annotation not available	RAB27B, member RAS oncogene family.	0.676
ENSGMOP00000007865	ENSGMOP00000020368	annotation not available	RAB27B, member RAS oncogene family.	0.666
ENSGMOP00000008695	ENSGMOP00000002675	Rab geranylgeranyltransferase subunit alpha.	GDP dissociation inhibitor 2.	0.661