STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC35F5Solute carrier family 35 member F5. (480 aa)    
Predicted Functional Partners:
LOC115556538
Ras-related protein rab7.
 
      0.564
RAB7A
RAB7A, member RAS oncogene family.
 
      0.562
ENSGMOP00000021454
Solute carrier family 35 member G2b.
      
 0.512
ENSGMOP00000001211
Peptidase D.
    
 0.511
ENSGMOP00000002216
X-prolyl aminopeptidase 3, mitochondrial.
    
 0.511
ENSGMOP00000005678
X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound.
    
 0.511
ENSGMOP00000006171
FAST kinase domains 3.
    
 0.511
PEPD
Peptidase D.
    
 0.511
ENSGMOP00000015947
X-prolyl aminopeptidase (aminopeptidase P) 1, soluble.
    
 0.511
ENSGMOP00000000419
NUS1 dehydrodolichyl diphosphate synthase subunit.
  
 
 0.492
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.