STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115556538Ras-related protein rab7. (207 aa)    
Predicted Functional Partners:
ENSGMOP00000002240
Rab interacting lysosomal protein.
    
 0.988
ENSGMOP00000006058
annotation not available
    
 0.951
ENSGMOP00000004357
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.935
ENSGMOP00000001403
Dynein, cytoplasmic 1, light intermediate chain 2.
   
 0.900
ENSGMOP00000018238
Dynein, cytoplasmic 1, light intermediate chain 1.
   
 0.900
ENSGMOP00000018622
FYVE and coiled-coil domain containing 1b.
    
 0.892
ENSGMOP00000019464
FYVE and coiled-coil domain containing 1a.
    
 0.892
ENSGMOP00000004963
TBC1 domain family, member 15.
    
 0.858
ENSGMOP00000007760
TBC1 domain family, member 17.
    
 0.858
DYNC1H1
Dynein cytoplasmic 1 heavy chain 1.
    
 0.855
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.