STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000012488annotation not available (553 aa)    
Predicted Functional Partners:
ENSGMOP00000009303
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.980
ENSGMOP00000000404
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.909
ENSGMOP00000004812
U2 small nuclear RNA auxiliary factor 2a.
    
 
 0.890
ENSGMOP00000015064
RNA binding motif protein 25a.
   
 
 0.875
ENSGMOP00000015101
RNA binding motif protein 25b.
   
 
 0.875
ENSGMOP00000012989
Splicing factor 3b, subunit 2.
   
 
 0.872
ENSGMOP00000008713
Splicing factor 3b, subunit 3.
    
 
 0.871
ENSGMOP00000002434
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 
 0.863
ENSGMOP00000012285
Small nuclear ribonucleoprotein 70 (U1).
    
 
 0.863
ENSGMOP00000015870
Ring finger protein 20, E3 ubiquitin protein ligase.
   
 0.860
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.