STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000012813Mitochondrial E3 ubiquitin protein ligase 1a. (352 aa)    
Predicted Functional Partners:
ENSGMOP00000002515
Transmembrane protein 115.
   
    0.760
ENSGMOP00000010592
Ubiquitin specific peptidase 30.
     
 0.741
ENSGMOP00000011181
UBX domain protein 7.
    
  0.740
tomm70
Translocase of outer mitochondrial membrane 70.
     
 0.677
ENSGMOP00000012484
Translocase of outer mitochondrial membrane 20b.
     
 0.677
ENSGMOP00000012733
Ribosomal protein S27a.
    
  0.675
ENSGMOP00000008291
Tumor protein p53.
    
   0.621
ENSGMOP00000006289
COMM domain containing 5.
   
 
  0.617
ENSGMOP00000016033
Coiled-coil domain containing 22.
   
 
  0.603
ENSGMOP00000006331
COMM domain containing 9.
     
 0.593
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.