STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000012897WD repeat domain 47a. (878 aa)    
Predicted Functional Partners:
ENSGMOP00000012891
Calmodulin regulated spectrin-associated protein family, member 2b.
 
 
 
 0.669
ENSGMOP00000001086
Calmodulin regulated spectrin-associated protein family, member 2a.
 
 
 
 0.666
ENSGMOP00000009857
Calmodulin regulated spectrin-associated protein family, member 3.
 
 
 
 0.666
ENSGMOP00000001670
Calmodulin regulated spectrin-associated protein 1b.
 
 
 
 0.554
ENSGMOP00000018102
Calmodulin regulated spectrin-associated protein 1a.
 
 
 
 0.554
ENSGMOP00000004462
F-box protein 33.
      
 0.525
ENSGMOP00000016743
WD repeat domain 78.
      
 0.521
ENSGMOP00000001629
Rab geranylgeranyltransferase subunit beta.
      
 0.508
ENSGMOP00000013156
annotation not available
   
 
 0.489
ENSGMOP00000013975
NME/NM23 nucleoside diphosphate kinase 6.
    
 
 0.427
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.