STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000013183SPT20 homolog, SAGA complex component. (787 aa)    
Predicted Functional Partners:
ENSGMOP00000020687
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.997
ENSGMOP00000000324
SAGA complex associated factor 29.
    
 0.996
ENSGMOP00000004055
Transformation/transcription domain-associated protein.
    
 0.996
ENSGMOP00000000390
annotation not available
    
 0.992
ENSGMOP00000016244
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.991
ENSGMOP00000010130
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.988
ENSGMOP00000014497
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.988
ENSGMOP00000001766
SPT7 like, STAGA complex gamma subunit.
    
 0.981
ENSGMOP00000007854
TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
    
 0.981
TADA1
Transcriptional adaptor 1.
    
 0.979
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.