STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000013316Collagen, type XI, alpha 1b. (1805 aa)    
Predicted Functional Partners:
ENSGMOP00000011583
annotation not available
    
  0.576
ENSGMOP00000000371
annotation not available
   
  0.531
ENSGMOP00000003984
Ligase I, DNA, ATP-dependent.
    
 0.501
ENSGMOP00000013604
annotation not available
  
 
0.492
ENSGMOP00000005783
Integrin, beta 4.
   
 0.477
ENSGMOP00000000540
Integrin, beta 6.
    
 0.476
ENSGMOP00000004553
Collagen, type VI, alpha 1.
  
 
0.475
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.466
ENSGMOP00000012733
Ribosomal protein S27a.
    
  0.466
ENSGMOP00000019029
Integrin, beta 8.
    
  0.464
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.