STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000013343Leucine rich repeat containing 42. (408 aa)    
Predicted Functional Partners:
ENSGMOP00000002616
Trafficking regulator of GLUT4 (SLC2A4) 1a.
      
 0.548
ENSGMOP00000012253
Ribosomal protein L36A.
      
 0.523
ENSGMOP00000002425
annotation not available
      
 0.491
ENSGMOP00000002508
annotation not available
      
 0.452
ENSGMOP00000010245
annotation not available
      
 0.418
ZBTB21
Zinc finger and BTB domain containing 21.
      
 0.407
ENSGMOP00000020982
Polysaccharide biosynthesis domain containing 1.
      
 0.405
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.