STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000013348Transcription elongation factor A (SII) N-terminal and central domain containing 2. (207 aa)    
Predicted Functional Partners:
POLR2E
RNA polymerase II subunit E.
   
 0.953
ENSGMOP00000001926
Polymerase (RNA) II (DNA directed) polypeptide D.
   
 0.950
ENSGMOP00000010653
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.948
polr2j
RNA polymerase II subunit J.
   
 0.948
polr2c
RNA polymerase II subunit C.
   
 0.947
polr2l
RNA polymerase II subunit L.
   
 0.945
ENSGMOP00000003655
SPT5 homolog, DSIF elongation factor subunit.
    
 0.945
ENSGMOP00000017428
Polymerase (RNA) II (DNA directed) polypeptide B.
   
 0.944
polr2i
RNA polymerase II subunit I.
   
 0.943
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
   
 0.941
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.