STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000013384Aprataxin. (331 aa)    
Predicted Functional Partners:
ENSGMOP00000013783
X-ray repair complementing defective repair in Chinese hamster cells 1.
    
 
 0.850
rae1
Ribonucleic acid export 1.
   
    0.749
ENSGMOP00000019140
Eukaryotic translation initiation factor 2B, subunit 1 alpha.
   
    0.748
ENSGMOP00000004693
tyrosyl-DNA phosphodiesterase 1.
    
 
 0.738
ENSGMOP00000013746
Ligase IV, DNA, ATP-dependent.
   
 
 0.710
ENSGMOP00000011393
Tonsoku-like, DNA repair protein.
   
  
 0.699
ENSGMOP00000011609
Poly (ADP-ribose) polymerase 2.
   
 
 0.688
ENSGMOP00000003531
Ligase III, DNA, ATP-dependent.
   
 
 0.687
ENSGMOP00000007460
EMSY transcriptional repressor, BRCA2 interacting.
      
 0.669
ENSGMOP00000003984
Ligase I, DNA, ATP-dependent.
   
 
 0.640
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.