STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000014377SPG11 vesicle trafficking associated, spatacsin. (1948 aa)    
Predicted Functional Partners:
ENSGMOP00000014935
Zinc finger, FYVE domain containing 26.
   
 
 0.760
ENSGMOP00000014988
Adaptor related protein complex 5 subunit zeta 1.
    
 
 0.704
ENSGMOP00000000898
Zinc finger, FYVE domain containing 21.
   
 
 0.698
ENSGMOP00000005280
annotation not available
    
 
 0.683
ENSGMOP00000017470
Adaptor related protein complex 5 subunit mu 1.
    
 
 0.657
ENSGMOP00000015656
Tectonin beta-propeller repeat containing 2.
   
  
 0.595
ENSGMOP00000011208
Adaptor related protein complex 5 subunit sigma 1.
    
 
 0.594
ENSGMOP00000006215
DnaJ (Hsp40) homolog, subfamily C, member 6.
      
 0.590
ENSGMOP00000017805
Cyclin G associated kinase.
      
 0.590
ENSGMOP00000004617
SPG21 abhydrolase domain containing, maspardin.
      
 0.583
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.