STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptlc1Serine palmitoyltransferase long chain base subunit 1. (472 aa)    
Predicted Functional Partners:
ENSGMOP00000020401
Serine palmitoyltransferase, long chain base subunit 3.
  
0.982
ENSGMOP00000001832
Serine palmitoyltransferase, long chain base subunit 2b.
  
0.981
ENSGMOP00000020416
Isthmin 1.
 
 
 0.971
ENSGMOP00000001847
Isthmin 2b.
 
 
 0.966
ENSGMOP00000007335
Serine palmitoyltransferase, small subunit A.
    
 0.966
ENSGMOP00000003559
3-ketodihydrosphingosine reductase.
     
 0.931
ENSGMOP00000010431
Mechanistic target of rapamycin kinase.
    
 0.929
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
   
 0.923
ENSGMOP00000020984
annotation not available
   
 0.923
ENSGMOP00000013281
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 0.919
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.