ENSGMOP00000014478 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000014478

Ribonucleoprotein, PTB-binding 2. (599 aa)

Predicted Functional Partners:

vcl

0.855

ENSGMOP00000006353

0.855

ENSGMOP00000012718

0.816

ENSGMOP00000009270

0.790

ENSGMOP00000010902

0.656

ENSGMOP00000015420

0.656

ENSGMOP00000020046

0.650

rps6

0.625

ENSGMOP00000005238

0.611

NCBP1

0.610

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGMOP00000005238	ENSGMOP00000014478	ENSGMOP00000005238	ENSGMOP00000014478	CCR4-NOT transcription complex, subunit 8.	Ribonucleoprotein, PTB-binding 2.	0.611
ENSGMOP00000006353	ENSGMOP00000014478	ENSGMOP00000006353	ENSGMOP00000014478	Vinculin a.	Ribonucleoprotein, PTB-binding 2.	0.855
ENSGMOP00000009270	ENSGMOP00000014478	ENSGMOP00000009270	ENSGMOP00000014478	Calcium homeostasis endoplasmic reticulum protein.	Ribonucleoprotein, PTB-binding 2.	0.790
ENSGMOP00000009270	ENSGMOP00000020046	ENSGMOP00000009270	ENSGMOP00000020046	Calcium homeostasis endoplasmic reticulum protein.	Nuclear cap binding protein subunit 2.	0.408
ENSGMOP00000010902	ENSGMOP00000014478	ENSGMOP00000010902	ENSGMOP00000014478	Heterogeneous nuclear ribonucleoprotein K.	Ribonucleoprotein, PTB-binding 2.	0.656
ENSGMOP00000010902	ENSGMOP00000015420	ENSGMOP00000010902	ENSGMOP00000015420	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein K, like.	0.844
ENSGMOP00000010902	ENSGMOP00000020046	ENSGMOP00000010902	ENSGMOP00000020046	Heterogeneous nuclear ribonucleoprotein K.	Nuclear cap binding protein subunit 2.	0.772
ENSGMOP00000010902	NCBP1	ENSGMOP00000010902	ENSGMOP00000009266	Heterogeneous nuclear ribonucleoprotein K.	Nuclear cap binding protein subunit 1.	0.658
ENSGMOP00000012718	ENSGMOP00000014478	ENSGMOP00000012718	ENSGMOP00000014478	FAU ubiquitin like and ribosomal protein S30 fusion a.	Ribonucleoprotein, PTB-binding 2.	0.816
ENSGMOP00000012718	ENSGMOP00000020046	ENSGMOP00000012718	ENSGMOP00000020046	FAU ubiquitin like and ribosomal protein S30 fusion a.	Nuclear cap binding protein subunit 2.	0.465
ENSGMOP00000012718	rps6	ENSGMOP00000012718	ENSGMOP00000013379	FAU ubiquitin like and ribosomal protein S30 fusion a.	Ribosomal protein S6.	0.999
ENSGMOP00000014478	ENSGMOP00000005238	ENSGMOP00000014478	ENSGMOP00000005238	Ribonucleoprotein, PTB-binding 2.	CCR4-NOT transcription complex, subunit 8.	0.611
ENSGMOP00000014478	ENSGMOP00000006353	ENSGMOP00000014478	ENSGMOP00000006353	Ribonucleoprotein, PTB-binding 2.	Vinculin a.	0.855
ENSGMOP00000014478	ENSGMOP00000009270	ENSGMOP00000014478	ENSGMOP00000009270	Ribonucleoprotein, PTB-binding 2.	Calcium homeostasis endoplasmic reticulum protein.	0.790
ENSGMOP00000014478	ENSGMOP00000010902	ENSGMOP00000014478	ENSGMOP00000010902	Ribonucleoprotein, PTB-binding 2.	Heterogeneous nuclear ribonucleoprotein K.	0.656
ENSGMOP00000014478	ENSGMOP00000012718	ENSGMOP00000014478	ENSGMOP00000012718	Ribonucleoprotein, PTB-binding 2.	FAU ubiquitin like and ribosomal protein S30 fusion a.	0.816
ENSGMOP00000014478	ENSGMOP00000015420	ENSGMOP00000014478	ENSGMOP00000015420	Ribonucleoprotein, PTB-binding 2.	Heterogeneous nuclear ribonucleoprotein K, like.	0.656
ENSGMOP00000014478	ENSGMOP00000020046	ENSGMOP00000014478	ENSGMOP00000020046	Ribonucleoprotein, PTB-binding 2.	Nuclear cap binding protein subunit 2.	0.650
ENSGMOP00000014478	NCBP1	ENSGMOP00000014478	ENSGMOP00000009266	Ribonucleoprotein, PTB-binding 2.	Nuclear cap binding protein subunit 1.	0.610
ENSGMOP00000014478	rps6	ENSGMOP00000014478	ENSGMOP00000013379	Ribonucleoprotein, PTB-binding 2.	Ribosomal protein S6.	0.625