STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000014978Vesicle transport through interaction with t-SNAREs 1B. (226 aa)    
Predicted Functional Partners:
ENSGMOP00000020182
Syntaxin 8.
   
 0.993
ykt6
YKT6 v-SNARE homolog.
    
 0.988
ENSGMOP00000016395
Syntaxin 16.
   
 0.982
ENSGMOP00000014976
annotation not available
   
 0.970
ENSGMOP00000020972
Syntaxin 10.
   
 0.968
ENSGMOP00000006556
Syntaxin 7-like.
   
 0.965
ENSGMOP00000016172
Vesicle-associated membrane protein 4.
   
 0.956
ENSGMOP00000019865
Si:ch73-234b20.5.
   
 0.956
ENSGMOP00000015115
annotation not available
   
 0.949
ENSGMOP00000018575
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.949
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.