STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000015250Decapping mRNA 1A. (475 aa)    
Predicted Functional Partners:
ENSGMOP00000006840
5'-3' exoribonuclease 1.
    
 0.994
edc3
Enhancer of mRNA decapping 3.
   
 0.986
ENSGMOP00000021970
Decapping mRNA 2.
    
 0.986
ENSGMOP00000001079
Enhancer of mRNA decapping 4.
    
 0.985
ENSGMOP00000013887
Decapping mRNA 1B.
  
 
0.973
UPF1
UPF1 RNA helicase and ATPase.
    
 0.955
ENSGMOP00000006165
PAT1 homolog 2.
    
 0.954
ENSGMOP00000013741
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.954
ENSGMOP00000003766
annotation not available
   
 0.949
ENSGMOP00000010200
DEAD (Asp-Glu-Ala-Asp) box helicase 6.
   
 0.949
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.