STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000015317Peptidylprolyl isomerase (cyclophilin)-like 6. (288 aa)    
Predicted Functional Partners:
ENSGMOP00000020585
SYF2 pre-mRNA-splicing factor.
    
 0.893
ENSGMOP00000004340
annotation not available
    
 0.845
ENSGMOP00000014790
Nucleoporin 155.
   
 0.845
ENSGMOP00000014302
Nucleoporin 88.
    
 0.844
ENSGMOP00000000027
Nucleoporin 93.
   
 0.830
prpf19
pre-mRNA processing factor 19.
    
 0.828
ENSGMOP00000018338
Nucleoporin 107.
   
 0.828
ENSGMOP00000001802
SNW domain containing 1.
    
 0.827
nup85
Nucleoporin 85.
   
 0.827
ENSGMOP00000009877
XPA binding protein 2.
   
 0.826
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.