STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000015513Retinoid X receptor, alpha a. (451 aa)    
Predicted Functional Partners:
ENSGMOP00000005729
Nuclear receptor subfamily 1, group H, member 3.
   
0.958
ENSGMOP00000001443
annotation not available
    
0.947
ENSGMOP00000008795
Peroxisome proliferator-activated receptor delta b.
    
0.917
ENSGMOP00000006307
annotation not available
    
0.911
ENSGMOP00000004002
Nuclear receptor subfamily 1, group H, member 4.
   
0.881
ENSGMOP00000017126
Nuclear receptor subfamily 1, group H, member 5.
   
0.881
ENSGMOP00000007440
Nuclear receptor corepressor 2.
    
 0.877
ENSGMOP00000011443
annotation not available
    
 0.877
PPARA
Peroxisome proliferator activated receptor alpha.
    
0.861
ENSGMOP00000019379
annotation not available
  
  
 
0.844
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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