STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000016204Chromodomain helicase DNA binding protein 8. (2060 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta 1.
   
 0.903
ENSGMOP00000018213
annotation not available
   
 0.876
ENSGMOP00000018999
Structure specific recognition protein 1a.
    
 
 0.831
ENSGMOP00000018683
annotation not available
   
 0.796
ENSGMOP00000020159
Translocase of outer mitochondrial membrane 20.
   
 0.796
polr2c
RNA polymerase II subunit C.
   
 0.795
ruvbl1
RuvB like AAA ATPase 1.
    
 0.791
ENSGMOP00000003755
Actin related protein 5.
    
 0.789
ENSGMOP00000010653
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.769
ENSGMOP00000001926
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.759
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.