STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000016287WD repeat domain 20b. (602 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48.
    
 0.954
ENSGMOP00000002567
annotation not available
   
 0.885
ENSGMOP00000014664
Ubiquitin specific peptidase 12b.
   
 0.885
usp12
Ubiquitin specific peptidase 12.
   
 0.885
ENSGMOP00000008059
Ubiquitin specific peptidase 38.
   
 0.857
ENSGMOP00000019516
Ubiquitin specific peptidase 1.
   
 0.857
ENSGMOP00000008767
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.805
ENSGMOP00000020687
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.792
ENSGMOP00000002524
Symplekin.
 
  
 0.791
ENSGMOP00000014497
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.791
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.