STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000016295annotation not available (218 aa)    
Predicted Functional Partners:
ENSGMOP00000020046
Nuclear cap binding protein subunit 2.
    
 0.869
ENSGMOP00000004812
U2 small nuclear RNA auxiliary factor 2a.
   
 0.865
ENSGMOP00000009367
Zgc:153681.
   
 0.864
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.863
ENSGMOP00000013142
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
  
 0.847
ENSGMOP00000002524
Symplekin.
   
 0.833
ENSGMOP00000000852
Cleavage and polyadenylation specific factor 1.
   
 0.826
ENSGMOP00000007216
Splicing factor 3b, subunit 1.
   
 0.818
ENSGMOP00000019067
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
    
 0.817
ENSGMOP00000001025
PCF11 cleavage and polyadenylation factor subunit.
   
 0.815
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.