ENSGMOP00000016380 protein (Gadus morhua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGMOP00000016380

annotation not available (290 aa)

Predicted Functional Partners:

ENSGMOP00000014072

0.927

ENSGMOP00000016649

0.927

ENSGMOP00000005980

0.883

ENSGMOP00000003908

0.873

ENSGMOP00000017179

0.859

ENSGMOP00000002141

0.765

ENSGMOP00000010214

0.726

ENSGMOP00000018356

0.699

ENSGMOP00000019565

0.689

ENSGMOP00000000658

0.676

Your Current Organism:

Gadus morhua

NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSGMOP00000000658	ENSGMOP00000005980	annotation not available	FAM20C golgi associated secretory pathway kinase b.	0.522
ENSGMOP00000000658	ENSGMOP00000010214	annotation not available	Fibrinogen alpha chain.	0.771
ENSGMOP00000000658	ENSGMOP00000014072	annotation not available	FAM20A golgi associated secretory pathway pseudokinase.	0.615
ENSGMOP00000000658	ENSGMOP00000016380	annotation not available	annotation not available	0.676
ENSGMOP00000000658	ENSGMOP00000016649	annotation not available	annotation not available	0.557
ENSGMOP00000000658	ENSGMOP00000017179	annotation not available	FAM20B glycosaminoglycan xylosylkinase.	0.517
ENSGMOP00000002141	ENSGMOP00000016380	annotation not available	annotation not available	0.765
ENSGMOP00000003908	ENSGMOP00000005980	annotation not available	FAM20C golgi associated secretory pathway kinase b.	0.945
ENSGMOP00000003908	ENSGMOP00000014072	annotation not available	FAM20A golgi associated secretory pathway pseudokinase.	0.682
ENSGMOP00000003908	ENSGMOP00000016380	annotation not available	annotation not available	0.873
ENSGMOP00000003908	ENSGMOP00000016649	annotation not available	annotation not available	0.962
ENSGMOP00000003908	ENSGMOP00000017179	annotation not available	FAM20B glycosaminoglycan xylosylkinase.	0.786
ENSGMOP00000005980	ENSGMOP00000000658	FAM20C golgi associated secretory pathway kinase b.	annotation not available	0.522
ENSGMOP00000005980	ENSGMOP00000003908	FAM20C golgi associated secretory pathway kinase b.	annotation not available	0.945
ENSGMOP00000005980	ENSGMOP00000016380	FAM20C golgi associated secretory pathway kinase b.	annotation not available	0.883
ENSGMOP00000010214	ENSGMOP00000000658	Fibrinogen alpha chain.	annotation not available	0.771
ENSGMOP00000010214	ENSGMOP00000016380	Fibrinogen alpha chain.	annotation not available	0.726
ENSGMOP00000014072	ENSGMOP00000000658	FAM20A golgi associated secretory pathway pseudokinase.	annotation not available	0.615
ENSGMOP00000014072	ENSGMOP00000003908	FAM20A golgi associated secretory pathway pseudokinase.	annotation not available	0.682
ENSGMOP00000014072	ENSGMOP00000016380	FAM20A golgi associated secretory pathway pseudokinase.	annotation not available	0.927