STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000016382Si:ch211-154o6.3. (500 aa)    
Predicted Functional Partners:
skp1
S-phase kinase associated protein 1.
    
 0.859
ENSGMOP00000009625
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
    
 0.831
ENSGMOP00000007297
F-box and WD repeat domain containing 11a.
   
0.828
ENSGMOP00000008218
F-box protein 4.
    
 0.814
ENSGMOP00000019739
Mitochondrial ribosomal protein L2.
    
 0.807
ENSGMOP00000001662
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
    
  0.797
ENSGMOP00000002178
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.795
ENSGMOP00000007930
Ring finger protein 7.
    
 0.795
ENSGMOP00000019190
Cell division cycle 6 homolog (S. cerevisiae).
    
 0.795
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.740
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.