STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000016481Ubiquitin specific peptidase 5 (isopeptidase T). (846 aa)    
Predicted Functional Partners:
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.949
ENSGMOP00000012733
Ribosomal protein S27a.
    
 0.942
ENSGMOP00000007083
Zinc finger, AN1-type domain 4.
    
 0.883
ENSGMOP00000006005
annotation not available
    
 0.882
ENSGMOP00000009338
annotation not available
    
 0.882
ENSGMOP00000012718
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
 0.882
ENSGMOP00000003758
Ubiquilin 4.
   
 0.839
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.834
ENSGMOP00000009298
RAD23 homolog A, nucleotide excision repair protein b.
    
 0.834
ENSGMOP00000019372
RAD23 homolog A, nucleotide excision repair protein a.
    
 0.834
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.