STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000016558Tetratricopeptide repeat domain 4. (219 aa)    
Predicted Functional Partners:
ENSGMOP00000009303
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.932
ENSGMOP00000006622
annotation not available
 
     0.928
ENSGMOP00000000413
HGH1 homolog (S. cerevisiae).
   
 
 0.925
ENSGMOP00000011583
annotation not available
   
 0.796
ENSGMOP00000016195
TNF receptor-associated protein 1.
  
 0.766
ENSGMOP00000005330
annotation not available
   
  0.761
ENSGMOP00000005370
annotation not available
   
  0.761
ENSGMOP00000005592
annotation not available
  
 0.753
hsp90ab1
Heat shock protein 90 alpha family class B member 1.
  
 0.753
ENSGMOP00000016316
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.
  
 0.753
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.