STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSDC2Cold shock domain containing C2. (138 aa)    
Predicted Functional Partners:
ENSGMOP00000008279
Small nuclear ribonucleoprotein polypeptide F.
    
  0.717
ENSGMOP00000006612
Small nuclear ribonucleoprotein polypeptide G.
    
  0.713
ENSGMOP00000009063
Small nuclear ribonucleoprotein D3 polypeptide, like.
   
 0.711
ENSGMOP00000002524
Symplekin.
    
 0.706
ENSGMOP00000020046
Nuclear cap binding protein subunit 2.
   
  0.693
ENSGMOP00000017496
Small nuclear ribonucleoprotein polypeptide E.
   
 0.687
ENSGMOP00000014791
Small nuclear ribonucleoprotein D2 polypeptide.
    
  0.668
NCBP1
Nuclear cap binding protein subunit 1.
    
  0.660
ENSGMOP00000010653
Polymerase (RNA) II (DNA directed) polypeptide F.
  
 
 0.656
ENSGMOP00000000531
Mitochondrial ribosomal protein L27.
  
 
 0.646
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.