STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000017519Si:ch211-188f17.1. (1452 aa)    
Predicted Functional Partners:
ENSGMOP00000012733
Ribosomal protein S27a.
    
 0.857
ENSGMOP00000008109
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.855
ENSGMOP00000003363
annotation not available
    
 0.832
ENSGMOP00000001357
SMAD family member 6a.
    
 0.772
smad7
SMAD family member 7.
    
 0.772
ENSGMOP00000008948
SMAD family member 6b.
    
 0.772
ENSGMOP00000015220
TNF receptor-associated factor 6.
    
 0.767
ENSGMOP00000012718
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
 0.740
ENSGMOP00000005055
Large tumor suppressor kinase 2.
   
 0.726
ENSGMOP00000018986
Large tumor suppressor kinase 1.
   
 0.726
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.